Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs73018864 chr3:13996757 A/G 0.000169 492 30.77 31.4 21.58 KM Plot
PRAD rs73018877 chr3:14005908 C/T 0.000143 492 30.78 31.38 21.58 KM Plot
PRAD rs73018895 chr3:14015766 C/T 0.000149 492 30.77 31.37 21.58 KM Plot
PRAD rs73020959 chr3:14064399 C/G 0.000149 492 30.77 31.37 21.58 KM Plot
PRAD rs73056302 chr12:10713531 T/C 0.000167 487 30.8 33.13 21.8 KM Plot
PRAD rs73058205 chr12:10713923 G/A 0.000167 487 30.8 32.9 21.8 KM Plot
PRAD rs73058241 chr12:10721787 A/G 5.74E-5 489 30.77 32.77 19.93 KM Plot
PRAD rs73058246 chr12:10725448 T/C 5.37E-5 489 30.8 32.9 19.93 KM Plot
PRAD rs73058249 chr12:10726552 C/T 5.27E-5 490 30.77 32.9 19.93 KM Plot
PRAD rs73062131 chr12:10729263 C/T 5.27E-5 490 30.77 32.9 19.93 KM Plot
PRAD rs73062144 chr12:10732585 G/A 5.1E-5 492 30.8 32.77 19.93 KM Plot
PRAD rs73062173 chr12:10738275 C/T 5.3E-5 490 30.8 32.77 19.93 KM Plot
PRAD rs73062177 chr12:10738443 A/G 5.8E-5 486 30.8 32.63 19.93 KM Plot
PRAD rs73062464 chr12:10739164 G/A 5.8E-5 486 30.8 32.63 19.93 KM Plot
PRAD rs73062469 chr12:10739929 G/A 5.8E-5 486 30.8 32.63 19.93 KM Plot